Find the Specifically Expressed Promoters of Rice

Transcriptome filters

scRNAseq filters

Overlap Result

Venn

Annotation

Numerator Sample Selected

Denominator Sample Selected

Denominator Sample Not Selected

Scale?

Row (z-score)

Column (z-score)

log2(x + 1)

None (TPM, Transcripts Per Million)

Cluster?

Row

Column

Color Mode?

Uniform scale(compared with all experiment)

Independent scale(compared in an independent experiment)

Heatmap Result

RNAseq Annotation

Link1: Data resource: Weiying Chen, 2019, The Plant Genome
Link2: TPM Download

scRNAseq Annotation 1

Link1: Data resource: Tian-Qi Zhang et al., 2021, Nature Communications
Link2: Marker Download

tSNE plot

scRNAseq Annotation 2

Link1: Data resource: Qing Liu et al., 2021, Molecular Plant
Link2: Marker Download

tSNE plot